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The Baker Laboratory

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Community computing allows everyone to get involved from home
PRINCIPLES FOR DESIGNING IDEAL PROTEIN STRUCTURES
Computational Design of Self-Assembling Protein Nanomaterials with Atomic Level Accuracy
Atomic model of the type III secretion system needle
Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing
Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis
Increased Diels-Alderase activity through backbone remodeling guided by Foldit players
Solution structure of a minor and transiently formed state of a T4 lysozyme mutant
Algorithm discovery by protein folding game players
Crystal structure of a monomeric retroviral protease solved by protein folding game players
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protein structure designed proteins players foldit computational model needle excited game approach enzyme nature energy structures folding models ground crystal molecular developed

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group recipes method scientific human solution building designing determination nmr hydrolysis algorithm blocks activity catalytic generate landscape ideal redesign complex interactions functional transiently affinity evolution computationally determine molecules strategies influenza monomeric online diseases catalyze

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determination nmr hydrolysis algorithm blocks activity catalytic generate landscape ideal redesign complex interactions functional transiently affinity evolution computationally determine molecules strategies influenza monomeric online diseases catalyze identical h1n1 general subunits player nanomaterials desired atomic khatib self-assembling 80-residue natural individually challenged revealed host populations specificity inhibitors helix-turn-helix password ability calculations insertion positioned secretion variants symmetry l99a generated g113a t4l coumarinyl t3ss problems diameter deep sequencing biotechnology comprehensive symmetric published protease efforts solved extend enzymes biology retroviral chemical crystallography conformers organophosphate solve mutant rosetta methods reactions replacement materials create free groups substrate modeling protein’s data active rosetta@home increased metalloenzyme landscapes guided formed lysozyme rules x-ray directed predicted binding tools high-resolution join including based tertiary backbone algorithms remodeling diels-alderase approaches scientists

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identical h1n1 general subunits player nanomaterials desired atomic khatib self-assembling 80-residue natural individually challenged revealed host populations specificity inhibitors helix-turn-helix password ability calculations insertion positioned secretion variants symmetry l99a generated g113a t4l coumarinyl t3ss problems diameter deep sequencing biotechnology comprehensive symmetric published protease efforts solved extend enzymes biology retroviral chemical crystallography conformers organophosphate solve mutant rosetta methods reactions replacement materials create free groups substrate modeling protein’s data active rosetta@home increased metalloenzyme landscapes guided formed lysozyme rules x-ray directed predicted binding tools high-resolution join including based tertiary backbone algorithms remodeling diels-alderase approaches scientists challenges inherently purple vallurupalli creativity macroscopic encountered 111-4 plastic demonstrate cyan molecular-scale life bouvignies da2010 loop yellow everyday minor catalysts reactivities untapped exploring offers eiben siegel promise holds 190-2 bale complements sites agent nerve analog isomer cyclosarin marked native leaving selectivity production renewable substrates additional enable bimolecular iterations characterization 18-fold 13-residue motif 24-residue remodel enhance efficiencies chemicals drugs fuels naturally occurring crowdsourcing game-driven report adopts tested redistribute examination modify share encode “recipes” encoded striking independently discovered benchmark period similarity unpublished mechanics gameplay popovic natl makedon tyka discovery cooper acad sci codified augmented collectively performing high outperforms frameworks aware non-scientists subsequent quality accurate remarkably problem 1 2 3 next username account request login user › last produce m-pmv contenders crushers dimaio effective discover formalize structural failure monkey virus mason-pfizer attempts range fractional showing populates occurs hydrophobic binds study phage atomic-level ‘invisible’ rationalizes observation csrosetta relaxation-dispersion combined strategy biophysical characterized understanding relation rigorous conformations depends excursions dynamics remains total number populated marginally elusive catalyzes structure-based hsqc spectra 1h-13c regions a-c selected recorded degree blue d-f colored peaks r119p validate generally pair mutations stabilize mutants identifying point introduced inverting delicate balance changing mechanism altering critically subnanomolar self-assemble architecture 1171-1174 science accuracy sheffler docked symmetrically arrangements low-energy packing complementary identify level engineering strands minimal beta helices alpha loops designs funnels foundation illuminate stable topologies protein-protein interfaces gram-negative bacteria sgourakis loquet type iii agents plague infect cells fever typhoid dysentery variety match trimeric 24-subunit self-assembly drive order octahedral 12-subunit complexes closely oligomeric assembled tetrahedral consisting fold shapes ultimately 3-dimensional storing develop capturing lead finding program speed running major cures cure edge area news research members publications employment contact content skip laboratory info links community contribute cutting enables involved computing attempt helping consistent local completely stabilized 222-227 non-local relating funneled sequences motifs patterns secondary tasumi-koga koga cancer alzheimer malaria hiv fight disease profit @rosettaathome principles prediction tweets full-chain robetta dependent syringe-like conventional optimize detectable contributions combining small hemagglutinin cases cross-reactive hemagglutinins broadly 51-residue baker maturation bottlenecks assemblies optimization powerful presents surface whitehead chevalier interaction leapfrog reprogram maps sequence-function neutralizes viruses engineered zinc-containing reactivity repurposing wide-ranging applications mouse adenosine residues conformation ∼10 efficiency deaminase transformations noncognate antibodies demonstrating monoclonal rivals potency mapping therapeutic khare kipnis zinc mononuclear utility n-terminus variant inherent non-crystallinity challenging three-dimensional stages infection insolubility docking limited inability particles isolated reconstructions cell cytoplasm hollow filament consists type-iii machine composed repeats effector delivered unfolded conduit forms capture conformational 24a-pitch helix turns assembly helical conserved c-terminus pore sequence 25a stabilizing forming right-handed filaments solid-state collected combination hybrid alternative prof lange vitro reconstructed institute planck max efficiently

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protein players

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players folding atomic computational structure game

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folding atomic computational structure game foldit increased solution hydrolysis diels-alderase guided minor organophosphate backbone activity remodeling mutant protease retroviral solved user login monomeric crystal lysozyme formed metalloenzyme algorithm discovery transiently redesign self-assembling structures nanomaterials level model accuracy ideal designing community laboratory computing involved principles type iii inhibitors influenza deep sequencing mononuclear baker designed function needle secretion optimization affinity specificity zinc